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2021-05-03 - Latest Browse the latest release here

2021-01-22

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Files "Peptides" and "CDS":

These files contain amino acid and nuclotide sequences for LRR-CR genes. For genes experiencing frameshift, the one or two bases that cause the frameshift are avoided in order to have nucleotide sequence that can be translated.

Files "cDNA":

These files contain nucleotide sequences for the complete LRR-CR genes without intron. In the case of genes experiencing frameshift, the sequences cannot be translated in comprehensive protein sequences. For all other genes, the files "CDS" and "cDNA" retrieve the same nucleotide seqences.

Files "cDNA_wFrameshift":

These files contain nucleotide sequences of non-canonical genes. In the case of genes experiencing frameshift, the sequence is completed with one or two "!" characters at the position of the frameshift in order to conserve the right reading frame (also used by V. Ranwez et al. for the MACSE programs). The translation of these sequences will create amino acid sequences with frameshift caracterised by an "X" character.

Nipponbare

Nipponbare_IDs.txt.zip
ORYSJ_nipponbare_LRR-CR__01-19-2021.gff.zip
OSJnip_LRR-CR_cDNA__01-19-2021.fasta.zip
OSJnip_LRR-CR_CDS__01-19-2021.fasta.zip
OSJnip_LRR-CR_PEP__01-19-2021.fasta.zip
OSJnip_noncanonic_cDNA_wFrameshift__01-19-2021.fasta.zip

Kitaake

Kitaake_IDs.txt.zip
ORYSJ_kitaake_LRR-CR__01-19-2021.gff.zip
OSJkit_LRR-CR_cDNA__01-19-2021.fasta.zip
OSJkit_LRR-CR_CDS__01-19-2021.fasta.zip
OSJkit_noncanonic_cDNA_wFrameshift__01-19-2021.fasta.zip

Orthologous

Nip_Kit_ortho.txt.zip